I don’t know about SUNY’s programs with the Navy or CG, but Mass Maritime has their SIP program. It’s pretty much Navy reserves and they pay you during school to help. I’m not to sure of the details though, so your best bet is to shoot an email to someone at the school. I’m sure their website has a page on it.
As for the Transportation major, it is a good program. They are also adding new deck simulators in their brand new library. I wish I hadn’t graduated before it was complete! The campus is nice, quiet and out of the way, unlike Suny which is under a bridge, even if they have a fort.
Anyway, good luck with your decision!